Identification of cell-cycle phases using neural network and steerable filter features

Xiaodong Yang; Houqiang Li; Xiaobo Zhou; Stephen T C Wong

doi:10.1007/11760191_103

Identification of cell-cycle phases using neural network and steerable filter features

Xiaodong Yang, Houqiang Li, Xiaobo Zhou, Stephen T C Wong

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

In this paper, we aim to address the cell phase identification problem, and two important aspects, the feature extraction methods and the classifier design, are discussed. In our study, we first propose extracting high frequency information of different orientations using Steerable filters. Next, we employ a multi-layer neural network using the back-propagation algorithm to replace K-Nearest Neighbor (KNN) classifier which has been implemented in the Cellular Image Quantitator (CELLIQ) system [3]. Experimental results provide a comparison between the proposed steerable filter features and existing regular features which have been used in published papers [3, 5]. From the comparison, it can be concluded that Steerable filter features can effectively represent the cells in different phases and improve the classification accuracy. Neural network also has a better performance than KNN currently deployed in CELLIQ system [3].

Original language	English (US)
Title of host publication	Advances in Neural Networks - ISNN 2006
Subtitle of host publication	Third International Symposium on Neural Networks, ISNN 2006, Proceedings - Part III
Publisher	Springer-Verlag
Pages	702-709
Number of pages	8
ISBN (Print)	3540344829, 9783540344827
DOIs	https://doi.org/10.1007/11760191_103
State	Published - 2006
Event	3rd International Symposium on Neural Networks, ISNN 2006 - Advances in Neural Networks - Chengdu, China Duration: May 28 2006 → Jun 1 2006

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	3973 LNCS
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Other

Other	3rd International Symposium on Neural Networks, ISNN 2006 - Advances in Neural Networks
Country/Territory	China
City	Chengdu
Period	5/28/06 → 6/1/06

ASJC Scopus subject areas

Theoretical Computer Science
Computer Science(all)

Access to Document

10.1007/11760191_103

Cite this

Yang, X., Li, H., Zhou, X., & Wong, S. T. C. (2006). Identification of cell-cycle phases using neural network and steerable filter features. In Advances in Neural Networks - ISNN 2006: Third International Symposium on Neural Networks, ISNN 2006, Proceedings - Part III (pp. 702-709). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 3973 LNCS). Springer-Verlag. https://doi.org/10.1007/11760191_103

Identification of cell-cycle phases using neural network and steerable filter features. / Yang, Xiaodong; Li, Houqiang; Zhou, Xiaobo et al.
Advances in Neural Networks - ISNN 2006: Third International Symposium on Neural Networks, ISNN 2006, Proceedings - Part III. Springer-Verlag, 2006. p. 702-709 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 3973 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Yang, X, Li, H, Zhou, X & Wong, STC 2006, Identification of cell-cycle phases using neural network and steerable filter features. in Advances in Neural Networks - ISNN 2006: Third International Symposium on Neural Networks, ISNN 2006, Proceedings - Part III. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 3973 LNCS, Springer-Verlag, pp. 702-709, 3rd International Symposium on Neural Networks, ISNN 2006 - Advances in Neural Networks, Chengdu, China, 5/28/06. https://doi.org/10.1007/11760191_103

Yang X, Li H, Zhou X, Wong STC. Identification of cell-cycle phases using neural network and steerable filter features. In Advances in Neural Networks - ISNN 2006: Third International Symposium on Neural Networks, ISNN 2006, Proceedings - Part III. Springer-Verlag. 2006. p. 702-709. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/11760191_103

Yang, Xiaodong ; Li, Houqiang ; Zhou, Xiaobo et al. / Identification of cell-cycle phases using neural network and steerable filter features. Advances in Neural Networks - ISNN 2006: Third International Symposium on Neural Networks, ISNN 2006, Proceedings - Part III. Springer-Verlag, 2006. pp. 702-709 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

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Identification of cell-cycle phases using neural network and steerable filter features

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