Zebrafish cell/neuron quantitation by modified circular hough transform

Tianming Liu; Jianfeng Lu; Jingxin Nie; Gang Li; Hui Yan; Jingyu Yang; Lei Guo; Weiming Xia; Stephen T.C. Wong

doi:10.1109/LSSA.2006.250413

Zebrafish cell/neuron quantitation by modified circular hough transform

Tianming Liu, Jianfeng Lu, Jingxin Nie, Gang Li, Hui Yan, Jingyu Yang, Lei Guo, Weiming Xia, Stephen T.C. Wong

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Scopus citations

Abstract

Microscopic imaging has become a critical step in the analysis of zebrafish phenotype, but tremendous amount of images generated from large number of embryos have become a bottleneck of data interpretation. The availability of an image informatics pipeline will be a significant step towards achieving reproducible quantitation of zebrafish phenotypes in scientific research and high-throughput screening. This paper presents an automated algorithm based on modified circular Hough transform for quantitation of zebrafish cells and neurons in microscopy imaging. Experimental results of three datasets are shown to demonstrate the performance of the algorithm. This algorithm has been integrated into our CBI Platform.

Original language	English (US)
Title of host publication	2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006
DOIs	https://doi.org/10.1109/LSSA.2006.250413
State	Published - 2006
Event	2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006 - Bethesda, MD, United States Duration: Jul 13 2006 → Jul 14 2006

Publication series

Name	2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006

Other

Other	2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006
Country/Territory	United States
City	Bethesda, MD
Period	7/13/06 → 7/14/06

ASJC Scopus subject areas

Health(social science)
Assessment and Diagnosis
Medicine(all)
Health Information Management
Electrical and Electronic Engineering
Human-Computer Interaction
Computer Science Applications
Signal Processing

Access to Document

10.1109/LSSA.2006.250413

Cite this

Liu, T., Lu, J., Nie, J., Li, G., Yan, H., Yang, J., Guo, L., Xia, W., & Wong, S. T. C. (2006). Zebrafish cell/neuron quantitation by modified circular hough transform. In 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006 Article 4015814 (2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006). https://doi.org/10.1109/LSSA.2006.250413

Zebrafish cell/neuron quantitation by modified circular hough transform. / Liu, Tianming; Lu, Jianfeng; Nie, Jingxin et al.
2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006. 2006. 4015814 (2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Liu, T, Lu, J, Nie, J, Li, G, Yan, H, Yang, J, Guo, L, Xia, W & Wong, STC 2006, Zebrafish cell/neuron quantitation by modified circular hough transform. in 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006., 4015814, 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006, 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006, Bethesda, MD, United States, 7/13/06. https://doi.org/10.1109/LSSA.2006.250413

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abstract = "Microscopic imaging has become a critical step in the analysis of zebrafish phenotype, but tremendous amount of images generated from large number of embryos have become a bottleneck of data interpretation. The availability of an image informatics pipeline will be a significant step towards achieving reproducible quantitation of zebrafish phenotypes in scientific research and high-throughput screening. This paper presents an automated algorithm based on modified circular Hough transform for quantitation of zebrafish cells and neurons in microscopy imaging. Experimental results of three datasets are shown to demonstrate the performance of the algorithm. This algorithm has been integrated into our CBI Platform.",

author = "Tianming Liu and Jianfeng Lu and Jingxin Nie and Gang Li and Hui Yan and Jingyu Yang and Lei Guo and Weiming Xia and Wong, {Stephen T.C.}",

year = "2006",

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AU - Liu, Tianming

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AU - Yang, Jingyu

AU - Guo, Lei

AU - Xia, Weiming

AU - Wong, Stephen T.C.

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AB - Microscopic imaging has become a critical step in the analysis of zebrafish phenotype, but tremendous amount of images generated from large number of embryos have become a bottleneck of data interpretation. The availability of an image informatics pipeline will be a significant step towards achieving reproducible quantitation of zebrafish phenotypes in scientific research and high-throughput screening. This paper presents an automated algorithm based on modified circular Hough transform for quantitation of zebrafish cells and neurons in microscopy imaging. Experimental results of three datasets are shown to demonstrate the performance of the algorithm. This algorithm has been integrated into our CBI Platform.

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Zebrafish cell/neuron quantitation by modified circular hough transform

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